## Joining, by = c("Protein IDs", "Gene names", "Protein names", "Fasta headers")
## Joining, by = c("Protein IDs", "Gene names", "Protein names", "Fasta headers")
## Using Protein IDs, Gene names, Protein names, Fasta headers as id variables
## `summarise()` regrouping output by 'Protein IDs', 'Gene names', 'Protein names' (override with `.groups` argument)
## Joining, by = c("Protein IDs", "Gene names", "Protein names", "Fasta headers")
## `summarise()` regrouping output by 'nutrient', 'samplingTime', 'replicate' (override with `.groups` argument)
## Joining, by = c("Protein IDs", "Gene names", "Protein names", "Fasta headers")
## Joining, by = c("Protein IDs", "Gene names", "Protein names", "Fasta headers")
## Using Protein IDs, Gene names, Protein names, Fasta headers as id variables
## Joining, by = c("Protein IDs", "Gene names", "Protein names", "Fasta headers", "channel", "nutrient", "samplingTime", "replicate", "ratio")
## Joining, by = c("Protein IDs", "Gene names", "Protein names", "Fasta headers")
## Joining, by = c("Protein IDs", "Gene names", "Protein names", "Fasta headers")
## Using Protein IDs, Gene names, Protein names, Fasta headers as id variables
## Joining, by = c("Protein IDs", "Gene names", "Protein names", "Fasta headers", "channel", "nutrient", "samplingTime", "replicate", "normed_ratio")
## Joining, by = c("Protein IDs", "Gene names", "Protein names", "Fasta headers", "channel", "nutrient", "samplingTime", "replicate", "genotype")
## Joining, by = c("Protein IDs", "Gene names", "Protein names", "Fasta headers", "nutrient", "samplingTime", "replicate", "genotype")
## Using Protein IDs, Gene names, Protein names, Fasta headers, nutrient, samplingTime, replicate, genotype as id variables
## [1] 551664 10
## Protein IDs Gene names Protein names
## 1 Q9P305 IGO2 mRNA stability protein IGO2
## 2 Q99385 VCX1 Vacuolar calcium ion transporter
## 3 Q99383 HRP1 Nuclear polyadenylated RNA-binding protein 4
## 4 Q99297 ODC2 Mitochondrial 2-oxodicarboxylate carrier 2
## 5 Q99258 RIB3 3,4-dihydroxy-2-butanone 4-phosphate synthase
## 6 Q99257 MEX67 mRNA export factor MEX67
## Fasta headers
## 1 sp|Q9P305|IGO2_YEAST mRNA stability protein IGO2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=IGO2 PE=1 SV=3
## 2 sp|Q99385|VCX1_YEAST Vacuolar calcium ion transporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=VCX1 PE=1 SV=1
## 3 sp|Q99383|HRP1_YEAST Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=HRP1 PE=1 SV=1
## 4 sp|Q99297|ODC2_YEAST Mitochondrial 2-oxodicarboxylate carrier 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=ODC2 PE=1 SV=1
## 5 sp|Q99258|RIB3_YEAST 3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RIB3 PE=1 SV=1
## 6 sp|Q99257|MEX67_YEAST mRNA export factor MEX67 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MEX67 PE=1 SV=1
## nutrient samplingTime replicate genotype data value
## 1 C T00 R1 spike-in intensity 35919000
## 2 C T00 R1 spike-in intensity 27087000
## 3 C T00 R1 spike-in intensity 306210000
## 4 C T00 R1 spike-in intensity 82491000
## 5 C T00 R1 spike-in intensity 157850000
## 6 C T00 R1 spike-in intensity 85041000
## Using Protein IDs, Gene names, Protein names, Fasta headers, nutrient, samplingTime, data as id variables
## Using Protein IDs, Gene names, Protein names, Fasta headers, nutrient, samplingTime, data as id variables
## Joining, by = c("Protein IDs", "Protein names", "Gene names", "Fasta headers", "nutrient", "samplingTime", "data")
## Using Protein IDs, Gene names, Protein names, Fasta headers, samplingTime, genotype, data as id variables
## Using Protein IDs, Gene names, Protein names, Fasta headers, samplingTime, genotype, data as id variables
## Joining, by = c("Protein IDs", "Protein names", "Gene names", "Fasta headers", "genotype", "samplingTime", "data")